Effects of soil moisture content on CO2 triggered soil physicochemical properties in a near-surface environment

Journal of Soils and Sediments - Carbon capture and storage (CCS) has been frequently discussed as a strategy for meeting CO2 emission reduction and its targets. However, some critical issues have...     

Lipid content and fatty acid composition of freshwater eels Anguilla japonica caught in different seasons and locations in South Korea

Fisheries Science - The objective of this study is to determine the lipid content and fatty acid composition of Anguilla japonica caught in South Korea. Seventy-nine eels caught at four different...     

Stability in reproductive timing and habitat usage of Chinook salmon across six years of varying environmental conditions and abundance

The spatial and temporal distribution of spawning activity by autumn‐run Chinook salmon Oncorhynchus tshawytscha (Walbaum) was examined across multiple years. The study period included two years of extreme drought conditions when water temperatures in the spawning reach of the Stanislaus River were considered sub‐optimal for spawning and egg incubation. Despite varying levels of superimposition, redd counts and densities remained stable and positively associated with river location, indicating that superimposition may be driven by habitat preference rather than the absence of suitable spawning locations. Spawning occurred slightly later during drought years (6–10 days later compared with wetter years). This delay was attributable to deferred migration instead of deferred spawning, and the majority of redds were constructed at water temperatures exceeding the optimal temperature range. As a consequence, estimates of juvenile production during 2014 and 2015 were among the lowest on record. These findings may be related in part to the high hatchery contribution to the population, above‐average temperatures during spawning and incubation, and superimposition rates. Management recommendations include adequate cold‐water storage in the upstream reservoir, refined spawning habitat restoration techniques in the light of superimposition rates and, on a broader system scale, actions that reduce the amount of stray hatchery Chinook salmon.     

Attachment and growth of vegetative propagules of Chondria crassicaulis Harvey (Ceramiales,Rhodophyta) under various culture conditions

The red alga Chondria crassicaulis has a wide‐ranging bioactive chemical composition and is used as a local foodstuff, representing a potentially new cultivar in Korea. The cultivation techniques were developed by examining the monthly changes in frond weight in a field population of C. crassicaulis from November 2016 to October 2017. For seedling production, temperature and irradiance effects on the attachment and growth of vegetative propagules of C. crassicaulis were evaluated. In addition, effects of day length and salinity on the propagule growth were examined. C. crassicaulis is a year‐round species with a maximum frond wet weight of 817 mg observed in July 2017, as seawater temperature increases to 20°C. The attachment of vegetative propagules was significantly affected by temperature and irradiance, with maximal values detected at 20–25°C and 60 µmol photons m^?2 s^?1. The relative growth rates of vegetative propagules of C. crassicaulis were the highest at 20–25°C, 60 µmol photons m^?2 s^?1, and a salinity of 25 psu. In conclusion, due to its tremendous tolerance under variable environmental conditions, the vegetative propagules of C. crassicaulis can be used as seedlings for mass cultivation.     

Genome-wide comparison of Carnobacterium maltaromaticum derived from diseased fish harbouring important virulence-related genes

Although Carnobacterium maltaromaticum has been used as a probiotic in fish, it was reported to cause disease for the first time in Korea. The objective of this study was to understand the differences between pathogenic and non-pathogenic strains. Pathogenicity was tested by challenging rainbow trout with C. maltaromaticum ATCC35586 and 18ISCm isolated from diseased fish, and DSM20342 isolated from a dairy product. We also compared 24 genomes of C. maltaromaticum strains plus the genome of our isolate 18ISCm sequenced in this study. Only the strains from diseased fish caused high mortality with severe histopathological changes. Although all strains shared more than 90% of Ko_id, wecC and xtmA were found only in strains from diseased fish. Interestingly, only strains from diseased fish harboured two wecC paralogs involved in the production of D-mannosaminuronic acid which is a major component of a well-known virulence factor, teichuronic acid. Two wecC paralogs of 18ISCm were increased when they were co-cultured with trout blood cells, suggesting that wecC genes might play a role in virulence. The results of this study show that strains isolated from diseased fish are different from strains derived from food in terms of pathogenicity to fish and the presence of virulence-related genes.     

Potential of indigenous Bacillus spp. as probiotic feed supplements in an extruded low‐fish‐meal diet for juvenile olive flounder,Paralichthys olivaceus

A 12‐week feeding trial was designed to assess the probiotic potential of indigenous Bacillus amyloliquefaciens and/or Bacillus subtilis singly or in combination with Bacillus licheniformis in an extruded feed for olive flounder (Paralichthys olivaceus) juveniles. A high fish meal (FM) diet (control) and a low‐FM diet containing an alternative protein blend (30% FM replacement, FM30) were formulated. Three other experimental diets were prepared by inclusion of B. amyloliquefaciens (BA), B. subtilis (BS), or a mixture of B. amyloliquefaciens, B. subtilis, and B. licheniformis (BASL) into FM30 diet, with a final concentration of 10⁶ CFU/g diet. Results indicated that the FM30 diet was well tolerated by flounder, and the overall performance was not affected by dietary treatments. Lysozyme activity and total immunoglobulin level were significantly reduced in flounders when fed with the FM30 diet compared with the BASL and BA diets, respectively. The Bacillus additives neither enriched the relative abundance of the corresponding Bacillus spp. in the relevant gut microbiota of olive flounder nor modulated the presumptive gene functions of the gut microbiome. Despite the absence of growth‐promoting effect, the tested probiotics could still be economically viable for use as immunostimulants in commercial flounder diets with partial FM replacement.     

Directly-prelithiated carbon nanotube film for high-performance flexible lithium-ion battery electrodes

Carbon nanotube (CNT) films are very flexible and serve as active materials for lithium-ion batteries (LIBs). Hence, they have high potential as flexible free-standing electrodes for wearable batteries. However, nanocarbon materials such as CNTs and graphene are of limited use as electrodes because they have a large initial irreversible capacity due to the formation of a solid electrolyte interphase (SEI). Herein, we prelithiated the CNT films to make them available as electrodes for flexible batteries by reducing their irreversible capacity. The SEI is pre-formed through a direct prelithiation (DP) method that brings lithium metal into direct contact with CNT films in an electrolyte. As a result, the capacity of directly-prelithiated CNT film electrodes continues to increase to 1520 mAh/g until 350th cycle of charge/discharge and their initial irreversible capacity vanishes. The changes in the electrochemical properties of CNT film electrodes by DP treatment and their flexibility are investigated.     

Drainage and irrigation performance of hybrid ditches in converted paddy fields under winter wheat cultivation in Hokkaido

Paddy fields converted into winter wheat fields in Hokkaido, Japan, receive extremely high snowfall, creating a risk of flood damage to crops in spring due to waterlogging of snowmelt runoff and poor drainage. Meanwhile, in June there is relatively little rainfall, and a lack of moisture inhibits winter wheat growth. Therefore, we developed a method involving a series of 30-cm-deep ditches in agricultural fields to be used for drainage during the flood-prone period and for furrow irrigation during the dry period using water drawn from the canals that feed the paddy fields. The ditches are called ‘hybrid ditches’ as they are able to perform both drainage and irrigation functions. In this study, we investigated the optimal construction timing and spacing for hybrid ditches. We also evaluated their ability to improve the drainage and irrigation of winter wheat. We found that the optimal timing for digging hybrid ditches is immediately after sowing, and the inter-ditch spacing for irrigation should be 15 m or less. The hybrid ditches promoted increased soil temperature and healthy development of wheat plants by improving drainage during the flood-prone period. In addition, water was successfully supplied via the hybrid ditches to irrigate the fields in June. Under experimental conditions in which rainfall was excluded, grain yield was 10% higher and percent protein content was more than 1% point greater in the irrigated plot compared with the non-irrigated plot. Grain yield was also observed to increase by 3–29% in demonstration tests conducted at local farms. From these results, we conclude that hybrid ditches are capable of improving the growth and yield of winter wheat by improving drainage and providing irrigation in converted paddy fields in Hokkaido.     

Updating the elite rice variety Kongyu 131 by improving the <Emphasis Type="Italic">Gn1a</Emphasis> locus

Background

Kongyu 131 is an elite japonica rice variety of Heilongjiang Province, China. It has the characteristics of early maturity, superior quality, high yield, cold tolerance and wide adaptability. However, there is potential to improve the yield of Kongyu 131 because of the relatively few grains per panicle compared with other varieties. Hence, we rebuilt the genome of Kongyu 131 by replacing the GRAIN NUMBER1a (Gn1a) locus with a high-yielding allele from a big panicle indica rice variety, GKBR. High-resolution melting (HRM) analysis was used for single nucleotide polymorphism (SNP) genotyping.

Results

Quantitative trait locus (QTL) analysis of the BC₃F₂ population showed that the introgressed segment carrying the Gn1a allele of GKBR significantly increased the branch number and grain number per panicle. Using 5 SNP markers designed against the sequence within and around Gn1a, the introgressed chromosome segment was shortened to approximately 430 Kb to minimize the linkage drag by screening recombinants in the target region. Genomic components of the new Kongyu 131 were detected using 220 SNP markers evenly distributed across 12 chromosomes, suggesting that the recovery ratio of the recurrent parent genome (RRPG) was 99.89%. Compared with Kongyu 131, the yield per plant of the new Kongyu 131 increased by 8.3% and 11.9% at Changchun and Jiamusi, respectively.

Conclusions

To achieve the high yield potential of Kongyu 131, a minute chromosome fragment carrying the favorable Gn1a allele from the donor parent was introgressed into the genome of Kongyu 131, which resulted in a larger panicle and subsequent yield increase in the new Kongyu 131. These results indicate the feasibility of improving an undesirable trait of an elite variety by replacing only a small chromosome segment carrying a favorable allele.

     

Identification of resistant germplasm containing novel resistance genes at or tightly linked to the <Emphasis Type="Italic">Pi2/9</Emphasis> locus conferring broad-spectrum resistance against rice blast

Background

The rice Pi2/9 locus harbors multiple resistance (R) genes each controlling broad-spectrum resistance against diverse isolates of Magnaporthe oryzae, a fungal pathogen causing devastating blast disease to rice. Identification of more resistance germplasm containing novel R genes at or tightly linked to the Pi2/9 locus would promote breeding of resistance rice cultivars.

Results

In this study, we aim to identify resistant germplasm containing novel R genes at or tightly linked to the Pi2/9 locus using a molecular marker, designated as Pi2/9-RH (Pi2/9 resistant haplotype), developed from the 5′ portion of the Pi2 sequence which was conserved only in the rice lines containing functional Pi2/9 alleles. DNA analysis using Pi2/9-RH identified 24 positive lines in 55 shortlisted landraces which showed resistance to 4 rice blast isolates. Analysis of partial sequences of the full-length cDNAs of Pi2/9 homologues resulted in the clustering of these 24 lines into 5 haplotypes each containing different Pi2/9 homologues which were designated as Pi2/9-A5, ?A15, ?A42, ?A53, and -A54. Interestingly, Pi2/9-A5 and Pi2/9-A54 are identical to Piz-t and Pi2, respectively. To validate the association of other three novel Pi2/9 homologues with the blast resistance, monogenic lines at BC₃F₃ generation were generated by marker assisted backcrossing (MABC). Resistance assessment of the derived monogenic lines in both the greenhouse and the field hotspot indicated that they all controlled broad-spectrum resistance against rice blast. Moreover, genetic analysis revealed that the blast resistance of these three monogenic lines was co-segregated with Pi2/9-RH, suggesting that the Pi2/9 locus or tightly linked loci could be responsible for the resistance.

Conclusion

The newly developed marker Pi2/9-RH could be used as a potentially diagnostic marker for the quick identification of resistant donors containing functional Pi2/9 alleles or unknown linked R genes. The three new monogenic lines containing the Pi2/9 introgression segment could be used as valuable materials for disease assessment and resistance donors in breeding program.